Institution: INSERM
Tasks in the project: Karine Clément is the coordinator of the MetaCardis project and leader of WP3.
WP1 & WP3: Her team will contribute to the coordination, collection and phenotyping of various biological samples from patients with low-grade inflammation. These samples will include adipose tissue samples and studies will focus on immunohistochemistry, circulating cytokines and cell sorting for monocytes. The impact of faecal water on adipose cell biology in human cell models will also be examined. Her team will also contribute to bioinformatics analysis of lifestyle factors in terms of interaction with host biology. This will be completed in collaboration with Danone Research.
Prof Karine Clément is a full professor of nutrition at the Division of Cardiometabolism, Pitié-Salpêtrière Hospital and at Pierre et Marie Curie University in Paris. Since 2011 she is director of the Center of Excellence ICAN (Institute of Cardiometabolism and Nutrition) which is dedicated to innovative care, research and training in the field of cardiology and metabolic diseases. ICAN aims to develop personalised medicine in the field of cardiometabolic diseases.
Karin Clément’s team (Nutriomique) has been involved in genetic and functional genomics studies of human obesity. Her work led to the identification of monogenic forms of obesity (Leptin receptor and MC4R mutations) and to the discovery of several genetic risk factors in common obesity. She has contributed to more than 200 international publications and reviews and many international conferences in this area. She performed a post-doctoral fellowship at Stanford University, CA, USA where she acquired competencies in gene profiling approaches applied to complex diseases (1999-2000). In 2001 she obtained a young INSERM “Avenir” grant to develop a team focused on the characterization of patterns of gene expression induced by environmental perturbations. Her group showed notably that inflammatory and remodelling genes in human adipose tissue are modulated by weight variation in parallel to macrophage infiltration changes. Deeper insight into mechanisms involved is now the focus of on-going studies. In addition, the team is exploring the link between environment changes and functional modifications in adipose tissue. A particular focus is the role of the gut microbiota and its role in modification of the function of adipose tissue and hence obesity.. She is a member and expert on several national and international scientific committees in obesity and metabolism and contributes to several European Networks in genetics and functional genomics (Diogenes, Hepadip, ADAPT, FLIP).
Institute number: 1
Institution: INSERM
Tasks in the project:
WP2 (WP leader): Owing to his experience in rodent genomics and genetics, Dominique Gauguier will coordinate WP2 and carry out experimental studies and validation of the effects of gut microbiomes and associated metabolomic patterns on phenotypes relevant to cardiometabolic diseases in congenic strains. He will contribute to WP4 with human transcriptomic profiling (RNA sequencing).
Dominique Gauguier was trained at the University of Paris where he was awarded a PhD in human nutrition in 1991. In 1994 he joined the Wellcome Trust Centre for Human Genetics at the University of Oxford where he became professor of mammalian genetics supported by a Wellcome Trust Senior Fellowship. He moved to the Cordeliers Research Centre in Paris in 2010 on a tenured research director position at the INSERM.
His research interests include the genetics of pathophysiological and molecular phenotypes and systems biology strategies designed to tackle the aetiology of complex diseases in rodent models and the application of the results in human genetics and systems medicine.
Web page: http://www.crcjussieu.fr/crc/index.php?cible=projet_equipe&id=6&spgmGal=equipes/...
Institute number: 1
Institution: INSERM
Tasks in the project:
WP3: selection of control group of French healthy subjects from the NutriNet-Santé Cohort, and matching to patients according to main socio-demographic and nutritional characteristics (age and gender, BMI). Biological samples (blood, urine and faeces) will be collected from the control group. A basic clinical assessment will also be carried out at the same time as samples are collected. Socio-demographic parameters, lifestyle habits and environmental risk factors will also be assessed. Participation is also envisaged in the optimisation and harmonisation of procedures for the characterisation of dietary intake and physical assessments. Comparisons of studied populations will also be made to the general population.
Full university professor and hospital practitioner at the Faculty of Medicine, University of Paris 13 and Hôpital Avicenne, Bobigny. He is also head of the research unit U557 at INSERM/INRA/CNAM/IUP13 focussing on nutritional epidemiology (2001 - present). He has a considerable experience in managing epidemiological studies and is the PI of several key cohort and cross-sectional surveys on nutrition and health status in France including SUVIMAX (1994-2003), SUVIMAX2 (2004-09) and the Nutri-net study (2009+). His work has contributed to a better understanding of the role of nutrition, foods, and nutrients in relation to disease prevention and health maintenance and made major impact on nutrition policy in France.
Prof Hercberg focuses his research on the relationship between nutrition and health and also the determinants of food habits and nutritional status and in particular, the risk and protection factors related to chronic diseases. The work carried out at Unité de Recherche en Nutritionelle (UREN) is based on cross-sectional studies, cohorts on general and pathological populations and primary and secondary prevention trials.
Institute Number: 1
Institution: ICL
Tasks in the project:
WP1: Metabolic phenotyping of the patient cohorts.
WP2: Metabolic profiling and interactome-mapping on mammalian signalling pathways.
WP4: Metabolic phenotyping of patient cohorts and statistical assessment of “-omics” data.
Dr. Marc-Emmanuel Dumas is lecturer in systems biomedicine. He studied in France and qualified as an engineer in agronomy (MEng, ingénieur agronome) in 1998 followed by two MSc qualifications in biochemistry and genetics and then applied physiology, He was awarded a PhD in Biochemistry, Molecular and Cell Biology" in 2002. Dr. Dumas first identified the role of methylamines (gut microbial metabolites) in insulin resistance, and pioneered approaches such as QTL mapping of metabolomics traits in the rat and integrated metabolome and interactome mapping (iMIM).
Dr. Dumas’ research interests include metabolomics, quantitative genetics and network biology. More specifically this includes integration of metabolomic data with other "omics" data (transcriptomics, proteomics, genome polymorphism and metagenomics) to identify metabolites and genes associated with pathologies related to insulin resistance and metabolic syndrome. Example pathologies include type 2 diabetes, obesity, dyslipidemia, atherosclerosis, hypertension, non-alcoholic fatty liver disease, but also ageing and cancer.
Web page: http://www1.imperial.ac.uk/medicine/people/m.dumas/
Institute Number: 3
Institution: UCPH
Tasks in the project:
WP1 (WP-leader): Identifying gut microbiota species associated with CMD risk factors. The work includes recruitment of volunteers, measurements of insulin resistance, low-grade inflammation, dyslipidemia, impaired glucose regulation and environmental factors, and specific metabolomic-based biological markers.
WP3: Major contributions to physiological studies and biological sample biobanking with recruitment and phenotyping of a total of 575 Danish study participants including patients with acute coronary syndrome, chronic coronary sclerosis, chronic coronary sclerosis with heart failure, metabolic syndrome, type 2 diabetes as well as healthy control subjects.
Prof Oluf Pedersen is director at Novo Nordisk Foundation Centre for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen, Denmark (DK) (www.metabol.ku.dk) and professor of molecular metabolism and metabolic genetics, Faculty of Health and Medical Sciences, University of Copenhagen. He has extensive leadership experience with multidisciplinary clinical and basic research teams at Steno Diabetes Centre and Hagedorn Research Institute. He is the founder and director of the Lundbeck Foundation Centre for Applied Medical Genomics in Personalised Disease Prediction, Prevention and Care (www.lucamp.org) (2007-2014), an international research centre of excellence. He has published more than 550 original papers and an h-index of 75 (Thomson Reuters Web of Science).
Oluf Pedersen and his research team contribute to gain novel insights into the complex and multifactorial aetiology of type 2 diabetes, obesity and cardiovascular disorders – scientific efforts that aim for novel approaches to prevent and treat these common disorders which are in epidemic growth.
Applying a variety of biological samples, technologies and statistical-genetics methods the researchers are focused on discovering genomic variation that predisposes for common cardio-metabolic disorders. The genomic discoveries are further characterized in genetic-physiology studies of disease intermediary traits and in large-scale studies of genetic-epidemiology elucidating the interaction of gene variants with health behavior (unhealthy dietary habits, sedentary lifestyle and other environmental factors).
Another major research effort is centered at studies of the role of the gut microbiota in primarily metabolic health and risk of metabolic disorders. Here the research team is doing quantitative metagenomics to characterize the human gut microbiome at levels of microbial genes, various taxa and derived functional potentials. Suspected human pathogenic microbiota is studied mechanistically in animal models.
A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010; 464:59-65.
Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes. Diabetologia 2013; 56: 298–310
Institute number: 4
Institution: UCPH
Tasks in the project:
WP1: Identifying gut microbiota species associated with CMD risk factors. The work includes recruitment of volunteers, measurements of insulin resistance, low-grade inflammation, dyslipidemia, impaired glucose regulation and environmental factors, and specific metabolomic-based biological markers.
WP3: Construction of biobank and phenotype database including the sampling of blood monocytes, serum, plasma, faeces and urine from e.g. non-diabetic subjects with the WHO-defined metabolic syndrome, android obese individuals and morbidly obese, individuals before and after bariatric surgery, non-autoimmune type-2 diabetes patients and patients with first acute coronary syndrome.
Lars Køber graduated from the University of Copenhagen in 1985 as a medical doctor. Since then he has worked on various aspects of cardiovascular disease, including ischemic heart disease, heart failure, hypertension and valvular heart disease. Since 1998 he has worked as a specialist in cardiology. He completed his thesis in 1999 with the title: ‘Left ventricular systolic function after acute myocardial infarction: prognostic importance, relation to congestive heart failure and as a target for intervention. He is now a consultant and professor of cardiology, Rigshospitalet, University of Copenhagen, Denmark. Besides his scientific interest and clinical work he also has a Bachelor in Health care administration from Storestrøms Amts Business School.
Main subjects are within the field of heart failure, cardiovascular epidemiology, controlled clinical trials, studies of myocardial function, endothelial function and regulation of the microcirculation. During the last five years he has also started investigations on the genetics of heart failure.
Lars Køber has published more than 450 papers including eight articles in the New England Journal of Medicine, seven in The Lancet and two in JAMA. Bibliometrics in Web of Science: average citations/paper: 21; total citations: >10.000; h-index: 51.
Institute number: 4
Institution: EMBL
Tasks in the project:
WP5 (WP-leader): EMBL will set up a data hub to integrate patient data and heterogeneous -omics data. Tasks will also include coordination of the development of a gut-specific annotation framework, integration of existing data and newly generated data into the data hub, generation of metagenomic profiles, a contribution to the metabolic modelling strategies, and development of visualisation tools and methods for disease risk prediction and biomarker discovery.
Peer Bork, PhD, is senior group leader and joint head of the Structural and Computational Biology unit at EMBL, a European research organisation with headquarters in Heidelberg. He also serves as strategic head of bioinformatics at EMBL. In addition to this he holds an appointment at the Max-Delbrueck-Center for Molecular Medicine in Berlin. Dr Bork received his PhD in Biochemistry (1990) and his Habilitation in Theoretical Biophysics (1995). His group has published more than 500 research articles in international peer-reviewed journals, with more than 50 in Nature, Science and Cell. According to ISI (analysing 10 year spans), Dr. Bork was for many years the most cited European researcher in molecular biology and genetics and currently is now the most cited European researcher in biochemistry and biology. He is on the editorial board of a number of journals including Science and PLoS Biology, and functions as senior editor of the journal Molecular Systems Biology. Dr Bork co-founded five biotech companies, two of which went public. He received the "Nature award for creative mentoring" for his achievements in nurturing and stimulating young scientists. He was also the recipient of the prestigious "Royal Society and Academie des Science Microsoft award" for the advancement of science using computational methods. He has also obtained a competitive ERC advanced investigator grant.
He works in various areas of computational biology and systems analysis with a focus on function prediction, comparative analysis and data integration.
Web page: http://www.embl.de/research/units/scb/bork/members/?s_personId=CP-60003241
Institute number: 5
Institution: UGOT
Tasks in the project:
WP2: Performs studies with gnotobiotic mice to delineate the mechanisms by which the gut microbiota contributes to metabolic diseases.
Fredrik Bäckhed holds a PhD obtained in 2002 from the Karolinska Institutet, Sweden and performed his postdoctoral training at Washington University, St Louis where he identified the gut microbiota as an environmental factor that regulates adiposity and obesity. Dr Bäckhed is professor at University of Gothenburg, Director of the Wallenberg Laboratory (www.wlab.gu.se) for cardiovascular research, and co-director for the Center for Cardiovascular and Metabolic research (www.cmr.gu.se). He also holds guest professorships at University of Copenhagen and University of Oslo.
Prof Fredrik Bäckhed combines clinically orientated research with gnotobiotic mouse models to address the role of the normal gut microbiota in metabolic diseases.
Institute number: 6
Institution: VIB
Tasks in the project:
WP5: Tasks include a contribution to meta-omics data analysis and multi-omics data integration, patient stratification and discovery of biomarkers. The aim of the work is move towards mechanistic and ecosystem-wide understanding of microbiota shifts in conjunction with host processes and the development of prognostic tools.
Jeroen Raes is group leader of the Bioinformatics and (eco-)Systems Biology (BSB) research group at VIB in Brussels. He has an extensive track record in meta-omics and microbiome research. He is associate editor for ISME journal, Scientific Reports (Nature publishing group), SIGS and Genomics Insights and is reviewer and/or committee member for ANR/NWO/FWO/ERC proposals.
PhD: Ghent University, Ghent, Belgium, 2003
Post-doc positions: Dept of Plant Systems Biology, VIB, Ghent, Belgium, 2003-05 and EMBL, Heidelberg, Germany, 2005-07
Scientist at EMBL, Heidelberg, Germany, 2007-09
VIB Group leader since September 2009
The Raes lab combines large-scale, next-generation sequencing with novel computational approaches to investigate the functioning and variability of the healthy human microbiome at the systems level and studies its alteration in disease.
Web page: http://www.vib.be/en/research/scientists/pages/jeroen-raes-lab.aspx
Institute number: 7
Institution: INSERM
Tasks in the project:
WP3: Prof Andreelli will contribute to recruitment, phenotyping and bio-sampling of the CMD patient cohort. Phenotyping will include the core phenotyping components (lifestyle, medical history, body composition, clinical parameters, biochemical, hormonal and metabolic parameters, and heart and vessels imaging) and more advanced phenotyping in selected subsamples of the cohort.
Fabrizio Andreelli MD, PhD, is professor of diabetology at University Pierre et Marie Curie-Paris 6. He works in the Department of Diabetology-Metabolism, Heart and Metabolism Division, Pitié-Salpêtrière University Hospital (Paris) which is part of the Institute of Cardiometabolism and Nutrition (ICAN). The Department of Diabetology-Metabolism is focused on the clinical management of type 1 and type 2 diabetes and their complications, educational training, metabolic phenotyping and classification of insulin resistant states and diabetes. He is a member of the strategic committee of ICAN and an expert in the Department of Metabolic Evaluation in Humans and in the animal house of the Pitié-Salpêtrière University Hospital.
His current research interests are the development of methods for the evaluation of insulin resistance and insulin secretion in vivo in both humans and in animal models of metabolic diseases. He also studies the metabolic effects of bariatric surgery in humans and in a mice model of gastric lap-band and gastric bypass.
Institute number: 8
Institution: APHP
Tasks in the project:
WP3: Prof Oppert will contribute to recruitment, phenotyping and biosampling of the CMD patient cohort. Phenotyping will include the core phenotyping components (lifestyle, medical history, body composition, clinical parameters, biochemical, hormonal and metabolic parameters, and heart and vessels imaging) and more advanced phenotyping in selected subsamples of the cohort.
WP8 (WP leader): Regulatory and ethical issues
Jean-Michel Oppert, MD, PhD, is professor of nutrition at University Pierre et Marie Curie-Paris 6. He is head of the Department of Nutrition, Heart and Metabolism Division, Pitié-Salpêtrière University Hospital (Paris) which is part of the Institute of Cardiometabolism and Nutrition (ICAN). The Department of Nutrition is focused on the management of severe and complex obesity cases.
He is founding member (2005-12) of the steering committee of the Health Enhancing Physical Activity (HEPA)-Europe network, which is supported by WHO Europe. He is past president (2009-12) of the European Association for the Study of Obesity (EASO).
His current research interests include the measurement of physical activity and sedentary behaviour in health and disease, the investigation of environmental determinants of physical activity and eating habits, and the study of behavioural and physiological changes associated with surgery-induced weight loss. He has been or is involved in EU projects centred on obesity and/or physical activity. These include Nugenob (FP5), HOPE (FP6), SPOTLIGHT (FP7), ALPHA (DG SANCO). At national level, he acted as coordinator for the multidisciplinary ELIANE (Environmental links to physical activity, nutrition and health) project (ANR 2007-11), and he is currently coordinator of the ACTI-Cités project, focused on active transport, urban mobility and health (INCA, National Cancer Research Fund 2011-14).
Institute number: 8
Institution: ULEI
Tasks in the project:
WP3: Recruitment of MetaCardis CMD patient cohort.
Prof. Stumvoll is an expert in the genetics of obesity and its associated diseases, the molecular characterisation of the regulation of hunger and satiety as well as the identification and validation of adipokines as a potential link between obesity, fat distribution and metabolic and cardiovascular diseases. Prof. Stumvoll is speaker of the clinical research group “Atherobesity” and the Integrated Research and Treatment Center (IFB) Adiposity Diseases.
Research interests include the pathogenesis of adiposity, insulin resistance and type 2 diabetes mellitus, the genetics of adiposity-associated disease, the regulation of hunger and satiety, adipokines, and the prevention of obesity and type 2 diabetes mellitus.
Web page: http://www.ifb-adipositas.de/en/prof-dr-michael-stumvoll
Institute number: 9
Institution: ULEI
Tasks in the project:
WP3: Recruitment of MetaCardis CMD patient cohort.
Matthias Blüher is professor in molecular endocrinology at the University of Leipzig and has extensive practical experience in the treatment of patients with type 2 diabetes, obesity and endocrine disorders. He is also the head of the coordinated research centre “Obesity mechanisms” (www.sfb1052.de) and a coordinator of the federally-funded Competence Network Obesity (CNO). He has published ~ 230 original research and review articles in the field of obesity research, pathogenesis of adverse fat distribution, insulin resistance, type 2 diabetes and other obesity related diseases.
Prof. Blüher has a specific research focus on the study of adipose tissue function including the regulation of adipose tissue cellularity and adipokine secretion. He has conducted several clinical trials on the effects of pharmacologic interventions in the treatment of diabetes and obesity, and the effects of different exercise regimens, dietary strategies and bariatric surgery.
Web page: http://www.ifb-adipositas.de/en/prof-dr-matthias-blueher
Institute number: 9
Institution: Danone Research
Tasks in the project:
WP1: Development of methods to measure and analyse the impact of dietary patterns on the association between gut microbiome and host CMD risk features.
WP3: The identification of relevant methods/tools (e.g. questionnaires) to obtain detailed information about health and lifestyle behaviour of study participants.
WP5: The identification of methods to help visualise dependence of both dietary and environmental patterns with both bacterial and serum metabolic profiles to determine CMD stages.
Dr Nicolas Gausserès has 20 years of experience in research and development programmes. In the last 15 years, through different positions, he has been closely involved in most of the nutrition and health programmes of Groupe Danone and has contributed to the launch and scientific research behind some brands. He also headed the clinical trial department for Danone. He is currently director of nutrition for Danone Research, the R&D organisation of Danone. In this role, he is in charge of improving the company’s nutrition performance and for building the expertise and the internal capacity to make Danone products more relevant with respect to the nutrition and public health objectives of different countries.
His main scientific expertise areas are nutrition, public health, nutrition physiology and eating behaviour. He has a solid background in food science. He has a strong experience in managing research programmes, innovation and scientific communications in the food industry.
Institute number: 10
Institution: Cargill
Tasks in the project:
WP6: Cargill will support appropriate communication of project objectives and achievements to relevant industrial stakeholders. The company will support the consortium with its dissemination experience and channels, including the use of media agencies and industry focused communications, participation in food industry related events, interaction with trade associations and industry funded bodies, etc. Also, support and advice will be given in terms of handling of the intellectual property generated within the project.
Douwina Bosscher has a PhD in pharmaceutical sciences. Her current position is global leader nutrition sciences, Cargill Global FIS (Food Ingredient Systems) R&D. Her work involves leading Cargill nutrition research programmes in relation to diverse health areas, the development of strategic research plans, and working together with various research institutes/universities. This includes (multi-disciplinary) collaborative research projects, (scientific) support for Cargill’s business units, partnering with business strategy development, scientific substantiation of health claim dossiers, representing Cargill in scientific-oriented organisations, building customer relations, presenting scientific concepts and results, and authoring publications and book chapters.
Institute number: 11
Institution: Chalmers University
Tasks in the project:
WP5: This task will involve setting up detailed metabolic models for the gut microbiota and combine these models with a model of the gut-system. The objective of this task is to simulate microbial-human interactions.
WP6: Involved in teaching a course and dissemination to industry and other researchers.
Jens Nielsen has an MSc degree in chemical engineering and a PhD degree (1989) in biochemical engineering from the Danish Technical University (DTU). Subsequently he established his independent research group and was appointed full professor there in 1998. In 2008 he was recruited as professor and director at Chalmers University of Technology, Sweden, where he is currently director of a research group of more than 50 people in the Life Science Area of Advance, which coordinates over 200 researchers in five departments. Jens Nielsen has published so far more than 400 research papers that have been cited more than 12,000 times (current H-factor 53).
Jens Nielsen’s main research interests are metabolic engineering of industrial microorganisms for production of fuels and chemicals, systems biology of microorganisms, systems medicine and human metabolism, and gut metagenomics and systems biology.
Web page: http://www.sysbio.se/Lab_Nielsen/lab_nielsen.html
Institute number: 12
Institution: INSERM-Transfert
Tasks in the project:
WP6: dissemination, training and exploitation of the foreground and management of intellectual property
WP7 (WP leader): assisting the coordinating institution for the legal and administrative management.
Catherine joined Inserm-Transfert in 2005. She graduated from the Ecole Normal Superieure in Paris, and received a PhD in molecular virology at the University René Diderot in 1996. She completed her studies mainly in the private sector (pre-doctoral study at L'Oreal and PhD studies at Genset). After completion of her thesis, she continued her research on cardiovascular disease in biotechnology companies. She also won the Aventis Foundation award for the creation of the company Helios Biosciences and helped set up within the engineering school ESIEA a teaching methodology in bioinformatics and life sciences. She is a regular expert at the European Commission for the People program. Thanks to her job training and experience as project leader in biotech, Catherine has experience with managing international research projects and multidisciplinary teams.
As a senior manager of many European projects, Catherine Clusel has acquired extensive experience in setting up and managing European and transatlantic projects in the field of metabolic and cardiovascular diseases. This includes EVGN (FP6-NoE coordinated by Inserm), Florinash (FP7-medium-scale coordinated by INSERM),NanoAthero (FP7-wide scale coordinated by INSERM) and various transatlantic alliances funded by the Fondation Leducq (CAPTAA; cycAMP and MITRAL).
Institute Number: 13
Institution: Biobyte
Tasks in the project:
WP5: Data integration, functional modelling and data visualisation.
After obtaining his PhD in natural sciences, Dr Letunic was involved in various large-scale data integration and visualisation projects, often leading their development. He is an experienced developer of databases and data visualisation user interfaces. Dr Letunic will serve as the lead coordinator of Biobyte's team in the scope of the project.
Bioinformatics, biological data visualisation, user interface research and development.
Web page: http://www.biobyte.de
Institute number: 14